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PUBLICATIONS

  1. Allio R., Schomaker-Bastos A., Romiguier J., Prosdocimi F., Nabholz B. & Delsuc F. (2020). MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics. Molecular Ecology Resources xx:xxx-xxx. doi:10.1111/1755-0998.13160

  2. Delsuc F. & Ranwez V. (2020). Accurate alignment of (meta)barcoding datasets using MACSE. In "Phylogenetics in the Genomic Era" edited by C. Scornavacca, F. Delsuc, N. Galtier, No Commercial Publisher, Authors Open Access Book, pp. 2.3:1-2.3:31. hal-02541199

  3. ​Simion P., Delsuc F. & Philippe H. (2020). To what extent current limits of phylogenomics can be overcome? In "Phylogenetics in the Genomic Era" edited by C. Scornavacca, F. Delsuc, N. Galtier, No Commercial Publisher, Authors Open Access Book, pp. 2.1:1-2.1:34. hal-02535366

  4. Scornavacca C., Delsuc F. & Galtier N. (2020). Phylogenetics in the Genomic Era. No Commercial Publisher, Authors Open Access Book, 563 pages. hal-02535070

  5. Song S.J.*, Sanders J.*, Delsuc F., Metcalf J.L., Amato K.R., Taylor M.W., Mazel F., Lutz H.L., Winker K., Graves G.R., Humphrey G., Gilbert J.A., Hackett S.J., White K.P., Skeen H.R., Kurtis S.M., Withrow J., Braile T., Miller M., McCracken K., Maley J., Blanto, J.M., McKenzie V.J. & Knight R. (2020). Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats. mBio 11:e02901-19. doi:10.1128/mBio.02901-19

  6. Ferreira-Cardoso S., Billet G., Gaubert P., Delsuc F. & Hautier L. (2020). Skull shape variation in extant pangolins (Manidae, Pholidota): allometric patterns and systematic implications. Zoological Journal of the Linnean Society 188:255-275. doi:10.1093/zoolinnean/zlz096
  7. Scornavacca C., Belkhir K., Lopez J., Dernat R., Delsuc F., Douzery E.J.P. & Ranwez V. (2019). OrthoMaM v10: scaling-up orthologous coding sequence and exon alignments with more than one hundred mammalian genomes. Molecular Biology and Evolution 36:861-862. doi:10.1093/molbev/msz015
  8. Ferreira-Cardoso S., Delsuc F. & Hautier L. (2019). Evolutionary tinkering of the mandibular canal linked to convergent regression of teeth in placental mammals. Current Biology 29:468-475. doi:10.1016/j.cub.2018.12.023

  9. Springer M.S., Emerling C.A., Gatesy J., Randall J., Collin M., Hecker N., Hiller M. & Delsuc F. (2019). Odontogenic Ameloblast-associated (ODAM) is inactivated in toothless/enamelless placental mammals and toothed whales. BMC Evolutionary Biology 19:31. doi:10.1186/s12862-019-1359-6

  10. Delsuc F., Emerling C.A. & Nachman M.W. (2019). Les chitinases, témoins de la radiation des mammifères placentaires. Médecine/Sciences 35:12-15. doi:10.1051/medsci/2018317

  11. Ranwez V., Douzery E.J.P., Cambon C., Chantret N. & Delsuc F. (2018). MACSE v2: toolkit for the alignment of coding sequences accounting for frameshifts and stop codons. Molecular Biology and Evolution 35: 2582-2584. doi:10.1093/molbev/msy159

  12. Emerling C.A., Delsuc F. & Nachman M.W. (2018). Chitinase genes (CHIAs) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals. Science Advances 4:eaar6478. doi:10.1126/sciadv.aar6478
  13. McKenzie V.J., Song S.J., Delsuc F., Prest T.L., Oliverio A.M., Korpita T.M., Alexiev A., Amato K.R., Metcalf J.L., Kowalewski M., Avenant N.L., Link A., Di Fiore A., Seguin-Orlando A., Feh C., Orlando L., Mendelson J.R., Sanders J. & Knight R. (2017). The effects of captivity on the mammalian gut microbiome. Integrative and Comparative Biology 57:690-704. doi:10.1093/icb/icx090

  14. Delsuc F., Gasse B. & Sire J.-Y. (2015). Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta. BMC Evolutionary Biology 15:148. doi:10.1186/s12862-015-0431-0

  15. Delsuc F., Metcalf J.L., Wegener Parfrey L., Song S.J., González A. & Knight R. (2014). Convergence of gut microbiomes in myrmecophagous mammals. Molecular Ecology 23:1301-1317. doi:10.1111/mec.12501

COMMUNICATIONS

  1. Allio R.*, Tilak M.-K., Avenant N.L., Corre E., Nabholz B. & Delsuc F. (4-5 February 2020). Roadkill genomics: high quality mammalian genomes from hybrid assembly of short Illumina reads and MinION long reads. Rencontres ALPHY : Génomique Evolutive, Bioinformatique, Alignement et Phylogénie (Lyon, France). [Oral communication]

  2. Allio R., Tilak M.-K., Scornavacca C., Avenant N.L., Corre E., Nabholz B. & Delsuc F.(11-15 January 2020). High quality reference genomes from roadkill enable species delimitation in aardwolf and bat-eared fox. 28th Plant and Animal Genome Conference PAGXVIII (San Diego, CA, USA). [Oral communication]

  3. Allio R., Tilak M.-K., Magdeleine A., Avenant N.L., Nabholz B. & Delsuc F.(14-15 October 2019). MinION roadkill: High quality mammalian genomes combining MinION long reads and Illumina short reads. Annual meeting of the Center for the Study of Biodiversity in Amazonia (Cayenne, French Guiana). [Oral communication]

  4. Garland K.*, Hautier L., Ferreira-Cardoso S., Wright M., Martinez Q., Fabre P.-H., Lebrun R. & Delsuc F. (9-12 October 2019). Exploring the olfactory capabilities of ant-eating mammals using the cribriform plate as an osteological proxy. 79th Annual Meeting of the Society of Vertebrate Paleontology. (Brisbane, Australia). [Poster]

  5. Hautier L.*, Garland K., Ferreira-Cardoso S., Wright M., Martinez Q., Fabre P.-H., Lebrun R. & Delsuc F. (21-25 July 2019). Sniffing out covariation patterns in the olfactory system of myrmecophagous mammals. International Congress of Vertebrate Morphology (Prague, Czech Republic). [Oral Communication]

  6. Ferreira-Cardoso S.*, Hautier L.Delsuc F. (21-25 July 2019). Patterns of phenotypic covariation in the skull of myrmecophagous placentals. International Congress of Vertebrate Morphology (Prague, Czech Republic). [Oral Communication]

  7. Allio R.*, Romiguier J., Nabholz B. & Delsuc F. (21-25 July 2019). Extracting complementary mitogenomic data from target enrichment experiments: a case study with 501 ant UCE librariesAnnual Meeting of the Society for Molecular Biology and Evolution (Manchester, UK). [Poster]

  8. Allio R., Tilak M.-K., Avenant N.L., Nabholz B. & Delsuc F.(22-24 May 2019). Genomics from roadkill - high quality mammalian genomes using hybrid assembly with MinION long reads. London Calling 2019 (London, UK). [Invited Oral Communication]

  9. Allio R., Tilak M.-K., Magdeleine A., Avenant N.L., Nabholz B. & Delsuc F.(18 March 2019). Genomics from roadkill: hybrid assembly with MinION long reads improves mammalian genome assemblies. Nanopore Day 2019 (Bordeaux, France). [Invited Oral Communication]

  10. Allio R.*, Romiguier J., Nabholz B. & Delsuc F. (7-8 February 2019). In search of mitochondrial DNA from Ultra Conserved Elements sequencing data. ALPHY: Bioinformatics and Evolutionary Genomics (Paris, France). [Oral Communication]

  11. Allio R., Tilak M.-K., Koual R., Weyer N., Panaino W., Fuller A., Avenant N.L., Hautier L. & Delsuc F.* (16-17 October 2018). A molecular barcoding reference for the ants and termites of Tswalu based on complete mitochondrial genomes. 9th Annual Oppenheimer De Beers Research Conference (Johannesburg, South Africa). [Oral Communication]

  12. Allio R.*, Koual R., Tilak M.-K., Avenant N.L., Nabholz B. & Delsuc F. (16-17 October 2018). Testing the hypothesis of allopatric speciation through biogeographical disjunction in three species of African carnivores. 9th Annual Oppenheimer De Beers Research Conference (Johannesburg, South Africa). [Poster]

  13. Sanders J.G.*, Song S.J., Metcalf J.L., Delsuc F., Amato K.R., Taylor M.W., McKenzie V.J. & Knight R. (7-11 June 2018). The evolution of the tetrapod gut microbiome. 2nd Joint Congress in Evolutionary Biology (Montpellier, France). [Oral communication]

  14. Emerling C.A.*, Delsuc F. & Nachman M.W. (19-22 August 2018). Chitinase (CHIA) genes provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals. 2nd Joint Congress in Evolutionary Biology (Montpellier, France). [Poster]

  15. Ferreira-Cardoso S.*, Delsuc F.Hautier L. (19-22 August 2018). Evolution of the mandibular canal in convergently evolved placental mammals with reduced dentition. 2nd Joint Congress in Evolutionary Biology (Montpellier, France). [Poster]

  16. Wright M.*, Ferreira-Cardoso S.Delsuc F.Hautier L. (19-22 August 2018). A study of morphological convergence in the nasal cavity of ant-eating and termite-eating mammals. 2nd Joint Congress in Evolutionary Biology (Montpellier, France). [Poster]

  17. Allio R.*, Koual R., Tilak M.-K., Avenant N.L., Nabholz B. & Delsuc F. (19-22 August 2018). Testing the hypothesis of allopatric speciation through biogeographical disjunction in three species of African carnivores (aardwolf, bat-eared fox, and black-backed jackal). 2nd Joint Congress in Evolutionary Biology (Montpellier, France). [Poster]

  18. Ferreira-Cardoso S.*, Billet G., Gaubert P., Delsuc F.Hautier L. (9-13 July 2018). Patterns of morphological variation of the skull in extant Manidae (Pholidota) and phylogenetic implications for extinct pangolins. 5th International Congress of Paleontology (Paris, France). [Poster]

  19. Song S.J.*, Sanders J.G.*, Metcalf J.L., Delsuc F., Amato K.R., Taylor M.W., McKenzie V.J. & Knight R. (7-11 June 2018). The evolution of the tetrapod gut microbiome. ASM Microbe, American Society of Microbiology Meeting (Atlanta, GA, USA). [Poster]

  20. Emerling C.A.*, Delsuc F. & Nachman M.W. (7-8 February 2018). Chitinase (CHIA) genes provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals. ALPHY/GTGC: Bioinformatics and Evolutionary Genomics (Montpellier, France). [Oral communication]

  21. Koual R., Tilak M.-K., Weyer N., Panaino W., Fuller A., Avenant N.L. & Delsuc F.* (17-18 October 2017). A metagenomic approach for assessing the diet of ant-eating mammals. 8th Annual Oppenheimer De Beers Research Conference (Johannesburg, South Africa). [Poster]

  22. Delsuc F.* (6-7 October 2017). The ERC ConvergeAnt project and its articulation with the Labex CEBA. Annual meeting of the Center for the Study of Biodiversity in Amazonia (Cayenne, French Guiana). [Oral communication]

  23. Hautier L.* & Ferreira-Cardoso S. (4-7 October 2017). A developmental perspective on the evolution of the dentition of “toothless mammals”. 17th International Symposium on Dental Morphology (ISDM) & 2nd congress of International Association for Paleodontology (IAPO) (Bordeaux, France). [Oral communication]

  24. Delsuc F.*, Song S.J., Metcalf J.L., Amato K.R., Sanders J.G., Avenant N.L., MacFadyen D.N., McKenzie V.J. & Knight R. (19-21 April 2017). Evolution of the gut microbiome in wild versus captive mammals. 1st International Conference on Holobionts (Paris, France). [Oral communication]

  25. Sanders J.G.*, Song S.J., Metcalf J.L., Amato K.R., Delsuc F., McKenzie V.J. & Knight R. (4-8 January 2017). The evolution of the tetrapod gut microbiome. Annual meeting of the Society for Integrative and Comparative Biology (New Orleans, LA, USA). [Oral communication]

  26. McKenzie V.J.*, Song S.J., Amato K.R, Delsuc F., Metcalf J.L., Sanders J.G. & Knight R. (4-8 January 2017). The effect of captivity on the vertebrate  microbiome. Annual meeting of the Society for Integrative and Comparative Biology (New Orleans, LA, USA). [Oral communication]

  27. Delsuc F.*, Song S.J., Metcalf J.L., Sanders J.G., Avenant N.L., MacFadyen D.N., McKenzie V.J. & Knight R. (18-19 October 2016). Evolution of the gut microbiome in wild versus captive mammals. 7th Annual Oppenheimer De Beers Research Conference (Johannesburg, South Africa). [Oral communication]

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Address

Institut des Sciences de l'Evolution
UMR 5554 CNRS, IRD, EPHE, Université de Montpellier
Place Eugène Bataillon, 34095 Montpellier Cedex 5, France

©2017 by Frédéric Delsuc.